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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17844920_17846085_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17844920 - 17846085
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
AGQSLSSMIVDDTSGDYKTA
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.6
0.58
0.8
74.3
29.3
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022223
17841995 - 17857667
15673