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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17846209_17846946_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17846209 - 17846946
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TATCTGTTATTT
Flanking Amino Acid:
FAERLYHALKGAGTRDGTLI
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
83.9
0.76
0.8
81.4
34.9
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
47.5
-0.1
2.2
69.92
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022223
17841995 - 17857667
15673