Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17847006_17847240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17847006 - 17847240

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTATATGCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATCATTGATT

Flanking Amino Acid:

GSLEEAMLAIVKCTRNVHCY

Intron Amino Acid Position:

248

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

81.4

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.3

0.44

62.7

43.2

Minor 5ss

37.4

-1.4

3.3

49.4

41.4

Minor BPS

69.5

0.69

1.6

85.23

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018995

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022223

17841995 - 17857667

15673