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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17849287_17849811_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17849287 - 17849811
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTCA
5'SS Class:
major
3'SS Sequence:
TGTTAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTGTGTTAAATT
Flanking Amino Acid:
DTALALQDAQTLYAAGEKIR
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.6
39.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.9
0.58
1
71.5
42.8
Minor 5ss
43.1
-0.8
3
57.6
46.6
Minor BPS
48.7
-0
2
67.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022223
17841995 - 17857667
15673