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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17849872_17850465_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17849872 - 17850465
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTTA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCTTCTCATA
Flanking Amino Acid:
FEQILVCLLQGERDNATLYV
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
75.7
36.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84
0.76
0.6
80.4
25.1
Minor 5ss
45.9
-0.4
3.2
64.4
47
Minor BPS
46.5
-0.2
2
64.52
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022223
17841995 - 17857667
15673