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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17850546_17851132_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17850546 - 17851132
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTCTCTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATACTTCCATT
Flanking Amino Acid:
IREIIKAYKEEYGSDLEEDI
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
79.5
0.66
0.8
76.7
31.9
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
46.3
-0.2
1.9
64.49
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018995
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022223
17841995 - 17857667
15673