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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17875008_17889832_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17875008 - 17889832
Intron Length:
14825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCTTTTACC
Flanking Amino Acid:
SLMRPQPGDKGRCMNFTRVK
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.2
0.75
0.8
74.5
35.4
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
77.3
0.84
1.5
86.65
30.8

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038840
17874013 - 17925049
51037