About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17897014_17899516_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17897014 - 17899516
Intron Length:
2503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TAACTCAGAAGC
Flanking Amino Acid:
PQLALLSFLYTDWNHPFHCS
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
42.8
-0.5
1.9
51.9
38.2

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028455
17893105 - 17925787
32683