Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17901370_17902803_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17901370 - 17902803

Intron Length:

1434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TGACACTAAAAA

Flanking Amino Acid:

CPAPVIEDAGQVVFLQVSMN

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

32.3

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

73.2

0.52

0.9

70.2

41.3

Minor 5ss

43.9

-0.7

2.9

66.1

38.6

Minor BPS

46.5

-0.2

1.9

57.43

40.8

Associated Gene:

Gene:

ANTXRL

Ensembl Gene ID:

ENSAPLG00000002292

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002466

17884964 - 17924996

40033

ENSAPLT00000038840

17874013 - 17925049

51037

ENSAPLT00000028455

17893105 - 17925787

32683