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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17904266_17908748_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17904266 - 17908748
Intron Length:
4483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCTCGTAACT
Flanking Amino Acid:
AAEPSSVCAGESFQVVVRGN
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.3
32.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
86.9
0.83
0.7
80.8
30.1
Minor 5ss
48.4
-0.1
2.8
67.4
44
Minor BPS
66.8
0.61
2
88.99
35.6

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038840
17874013 - 17925049
51037
ENSAPLT00000028455
17893105 - 17925787
32683
ENSAPLT00000002466
17884964 - 17924996
40033