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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17908810_17908910_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17908810 - 17908910
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
CTAAATCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTATCTAAATC
Flanking Amino Acid:
FYALRGTIDSILKKSCIEIL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
63.8
43.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
73
0.52
1
65.1
40.7
Minor 5ss
41.8
-0.9
2.8
54.9
43.3
Minor BPS
63
0.39
1.7
74.32
36.8

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002466
17884964 - 17924996
40033
ENSAPLT00000038840
17874013 - 17925049
51037
ENSAPLT00000028455
17893105 - 17925787
32683