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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17908992_17909192_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17908992 - 17909192
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCATGA
Flanking Amino Acid:
VGVKDFNETQLSTIADSIDH
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
56.2
0.19
2.1
75.6
41.9

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028455
17893105 - 17925787
32683
ENSAPLT00000002466
17884964 - 17924996
40033
ENSAPLT00000038840
17874013 - 17925049
51037