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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17909448_17911455_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17909448 - 17911455
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TGTGCTCTAACT
Flanking Amino Acid:
NEQIYHETYGGVRTASVIIA
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
69.2
0.43
1
63.4
38.5
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
62.6
0.47
1.8
81.32
40.3

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038840
17874013 - 17925049
51037
ENSAPLT00000028455
17893105 - 17925787
32683
ENSAPLT00000002466
17884964 - 17924996
40033