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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17911490_17911592_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17911490 - 17911592
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACACACC
5'SS Class:
major
3'SS Sequence:
AAATTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTCTAAAATT
Flanking Amino Acid:
DTFMHEGFKRANEQIYHETY
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.2
54.2
43.4
Major BPS
80
0.75
1
78.6
31
Major PPT
72.9
0.52
1
66.2
44.1
Minor 5ss
38.5
-1.3
3.1
43.9
43.8
Minor BPS
54.7
0.22
1.9
77.32
39.6

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038840
17874013 - 17925049
51037
ENSAPLT00000028455
17893105 - 17925787
32683
ENSAPLT00000002466
17884964 - 17924996
40033