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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17911675_17912806_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17911675 - 17912806
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
GTTIMKLTENREAIRRGLEI
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.1
0.41
1.1
68.3
36.5
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
ANTXRL
Ensembl Gene ID:
ENSAPLG00000002292
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038840
17874013 - 17925049
51037
ENSAPLT00000028455
17893105 - 17925787
32683
ENSAPLT00000002466
17884964 - 17924996
40033