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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_179218_179349_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179218 - 179349
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
ATCCCCTCCAGC
Flanking Amino Acid:
SVQQEEFWDFSFHEMAMYDV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
77.1
0.61
0.8
68.3
37.4
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
43.6
-0.5
2.2
54.28
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306