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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17928099_17933605_F

Intron Information:

Intron Rank:
133181
Intron Class:
major
Intron Phase:
Intron Coordinates:
17928099 - 17933605
Intron Length:
5507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
ATTTATGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAATATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
62
41.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.9
0.7
0.9
77.6
40.7
Minor 5ss
29.1
-2.4
3.4
30.6
42.7
Minor BPS
60.9
0.42
1.5
70.78
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031098
17927260 - 17935423
8164