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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17940272_17942759_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17940272 - 17942759
Intron Length:
2488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
AGGACTTCAAAC
Flanking Amino Acid:
ERRSIHYVFKVDVTSVHSPT
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
80.1
0.68
0.8
74.8
33.6
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
47
-0.2
1.6
52.15
38.5

Associated Gene:

Gene:
ZNF488
Ensembl Gene ID:
ENSAPLG00000002179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002181
17940049 - 17944813
4765