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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17942989_17943644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17942989 - 17943644
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTGCAAAACT
Flanking Amino Acid:
NEIKAQSPQNELRCQECNRV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
48.8
-0
2.3
76.44
46

Associated Gene:

Gene:
ZNF488
Ensembl Gene ID:
ENSAPLG00000002179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002181
17940049 - 17944813
4765