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Intron Name: Anas_platyrhynchos_platyrhynchos_6_179460_180378_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179460 - 180378

Intron Length:

919

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TTATTGTGAACG

Flanking Amino Acid:

YVGHAQGNSLGFIAFSSMPQ

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.2

39.5

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

28.5

-2.5

3.1

31.8

42.6

Minor BPS

50.5

-0.1

2.2

64.75

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015088

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015733

177851 - 183156

5306