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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17957209_17964780_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17957209 - 17964780
Intron Length:
7572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTC
5'SS Class:
major
3'SS Sequence:
CAAACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTTTTCCAAACT
Flanking Amino Acid:
DNIPGIMPKQIPSPEVFEDL
Intron Amino Acid Position:
1429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
67.4
38.9
Major BPS
68
0.45
1
57.8
39
Major PPT
70.7
0.47
1
66
40.2
Minor 5ss
39.6
-1.2
3.6
58.4
46.5
Minor BPS
63.3
0.49
2
88.18
37

Associated Gene:

Gene:
RBP3
Ensembl Gene ID:
ENSAPLG00000002097
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002150
17951499 - 17981884
30386