Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17979817_17981538_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17979817 - 17981538

Intron Length:

1722

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CGTCTTTTAATT

Flanking Amino Acid:

SNIVRSFSTEDVVSLASAEE

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.3

34.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.6

0.82

0.7

81.5

28.7

Minor 5ss

28.3

-2.5

3.5

37.3

47.4

Minor BPS

64.5

0.53

1.2

73.2

38.3

Associated Gene:

Gene:

RBP3

Ensembl Gene ID:

ENSAPLG00000002097

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002150

17951499 - 17981884

30386