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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_17987957_17991640_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17987957 - 17991640
Intron Length:
3684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTACAC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GAAGCAATAACC
Flanking Amino Acid:
AGTCEFPMPKVVRPSNHATI
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
58.8
40.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
84.1
0.77
0.8
76.4
37.7
Minor 5ss
30.9
-2.2
3.3
41.7
45
Minor BPS
46.4
-0.2
1.9
56.06
41.2

Associated Gene:

Gene:
GDF10
Ensembl Gene ID:
ENSAPLG00000029019
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033202
17983483 - 17996850
13368