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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_180516_181080_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180516 - 181080
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CACACAGTGACC
Flanking Amino Acid:
IAFLPDIVLKTIFGTKQLTL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
80
0.68
0.9
73.4
37
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
41.5
-0.6
2.2
48.29
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306