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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18106_20498_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18106 - 20498
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ACGTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTCTCTTAAAT
Flanking Amino Acid:
SQILSLLSDIGSGIQYLHEN
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
74.1
0.54
1
69.7
41
Minor 5ss
43.7
-0.7
2.6
56.9
42.5
Minor BPS
71
0.74
1.4
82.38
38.6

Associated Gene:

Gene:
CHUK
Ensembl Gene ID:
ENSAPLG00000011503
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039931
12183 - 46227
34045
ENSAPLT00000037450
14485 - 44896
30412
ENSAPLT00000012207
12183 - 45972
33790