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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_181228_181989_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
181228 - 181989
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTAGAAAAAACT
Flanking Amino Acid:
GGYNKKNLNTSRLDVYLAHF
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.4
37.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
38.4
-1.3
3.1
51.2
45.5
Minor BPS
41
-0.6
2.2
64.2
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306