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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18127870_18129144_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18127870 - 18129144
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGCCAGTTGATA
Flanking Amino Acid:
VRIIEMINKQTEEKRIIRHL
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.6
0.8
0.8
77.6
35.4
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
43.5
-0.5
2.1
53.32
39

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078