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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18129480_18130605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18129480 - 18130605
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGATCTACAACT
Flanking Amino Acid:
DKNRYQDILPYDKTRVPLGE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.8
0.63
1
70.1
44.9
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
50.3
0.09
1.8
69.83
40.4

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078