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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18132521_18134536_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
18132521 - 18134536
Intron Length:
2016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAACCATG
5'SS Class:
weak_major
3'SS Sequence:
TGTTGATATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTTTGTTGATA
Flanking Amino Acid:
MPHRISILPRSRAFVSEDEL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
66.4
45.1
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
68.9
0.43
1
62.7
42.6
Minor 5ss
51
0.03
2.5
66.5
38.7
Minor BPS
60.6
0.33
2
77.25
33.8

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078