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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18134653_18136344_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18134653 - 18136344
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACTTCCATAAAA
Flanking Amino Acid:
YQDIISNTSDRSQKCAGCEG
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
62.5
0.39
1.7
72.37
39

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078