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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18138301_18140374_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18138301 - 18140374
Intron Length:
2074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTGTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTACCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
78.7
0.65
0.9
77.9
35.6
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
87.2
1.25
1
96.97
27.6

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078