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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18140547_18141343_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18140547 - 18141343
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTGTTTTATCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.7
0.73
0.8
81.4
35.9
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
54.4
0.13
1.7
65.74
41.7

Associated Gene:

Gene:
PTPN20
Ensembl Gene ID:
ENSAPLG00000020052
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045247
18126394 - 18141471
15078