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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18141506_18143034_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18141506 - 18143034
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TAAACTCCAACT
Flanking Amino Acid:
QSTPDPPRMPGLHY*
Intron Amino Acid Position:
1694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
87.7
28.5
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
82
0.72
0.8
74.7
40
Minor 5ss
22.7
-3.1
3.9
33.8
42.3
Minor BPS
48.3
-0
1.9
68.43
41.6

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828