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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18143101_18143568_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18143101 - 18143568
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TGGTTTTTCACA
Flanking Amino Acid:
SQEQQLPHQHEEHLKETNCG
Intron Amino Acid Position:
1672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
80.8
0.69
0.9
75.8
38.1
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
56.6
0.2
1.7
66.94
40.1

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828