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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18145347_18146426_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18145347 - 18146426
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ACATATTTCACT
Flanking Amino Acid:
ATQNVQIKATRNGNPVVPID
Intron Amino Acid Position:
1630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.6
0.73
0.8
73.9
36.8
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
49.6
0.05
1.9
67.84
43

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828