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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18146638_18147548_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18146638 - 18147548
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TTTGTCTGCATT
Flanking Amino Acid:
TLTKGANGQLGLKLTGGAGS
Intron Amino Acid Position:
1560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
79.6
35.4
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
70.1
0.45
1
61.5
44.4
Minor 5ss
38.1
-1.3
2.7
51.1
45.4
Minor BPS
49.8
0.07
2
75.82
41.6

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828