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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18148523_18149455_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18148523 - 18149455
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGGAT
5'SS Class:
major
3'SS Sequence:
CTTATTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTATTTTAATA
Flanking Amino Acid:
EKDKKEDCTREMEVFVTLTR
Intron Amino Acid Position:
1449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
40.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.4
0.59
0.9
73.4
35.7
Minor 5ss
36.5
-1.5
3.6
46
49.2
Minor BPS
66.6
0.52
1.3
70.89
36

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828