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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18154161_18155562_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18154161 - 18155562
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGGC
5'SS Class:
major
3'SS Sequence:
TCTTCCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATAAGA
Flanking Amino Acid:
GTSTQGLFYQDVLHLLRGAP
Intron Amino Acid Position:
1196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
55.3
42.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.4
0.53
0.8
73.1
31.7
Minor 5ss
35.2
-1.7
3.6
51
45.6
Minor BPS
58.4
0.26
1.9
73.15
38.5

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828