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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18157346_18157868_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18157346 - 18157868
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATATTT
Flanking Amino Acid:
PADKDGQIKIGDRLLEVDGI
Intron Amino Acid Position:
1046

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
55.9
0.26
1.8
77.69
38.8

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828