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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18160890_18161006_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18160890 - 18161006
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCACTGTC
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCTTATTT
Flanking Amino Acid:
PADRAGNIKPGGRLISVNNI
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.4
71.6
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
1
87.1
30.6
Minor 5ss
38.2
-1.3
3.2
53
44.1
Minor BPS
75.7
0.89
1.5
88.91
36

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828