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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18169832_18170698_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18169832 - 18170698
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTCATT
Flanking Amino Acid:
QAELGNYASEVHGKSYFRVE
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
76.5
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
71.2
0.48
1
71.9
26.8
Minor 5ss
36.5
-1.5
3.2
47.6
48.1
Minor BPS
53.9
0.2
1.7
73.2
38.3

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828