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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18170838_18170933_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18170838 - 18170933
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTATGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGTTCCTAATCC
Flanking Amino Acid:
KFFVNHFNIIQHGLTRHQFY
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
81.1
0.7
0.9
72.8
42
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
61.2
0.33
2
75.09
41.5

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828