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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18175388_18177989_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18175388 - 18177989
Intron Length:
2602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCGAA
5'SS Class:
major
3'SS Sequence:
ATCTCCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
TCTTGCTTACTA
Flanking Amino Acid:
TQSSYKLFINRSVSAVEEIP
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.4
35.6
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
71.4
0.48
1
71.7
32.4
Minor 5ss
35.7
-1.6
3.3
46.7
48.6
Minor BPS
56.5
0.2
2
70.44
42.7

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828