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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18181737_18183164_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18181737 - 18183164
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCATCATATTT
Flanking Amino Acid:
PPSSQMNLHRDNGSRLMNYS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
48.1
-0
1.9
68.89
42.4

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828