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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18184296_18185329_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18184296 - 18185329
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGTCATTTAACT
Flanking Amino Acid:
SADYQVPPNQSLQLSDQLHS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.94
0.9
82.2
34
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
67.4
0.39
1.1
66.8
43.1
Minor 5ss
21.1
-3.3
3.3
27.7
36.2
Minor BPS
69.3
0.69
1.5
83.56
36.7

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828