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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18185396_18185577_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18185396 - 18185577
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TCTGTTTTGACA
Flanking Amino Acid:
NKNQCIGLTKMLVYSLGMTL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
62.2
0.38
1.4
68.82
38.3

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828