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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18185736_18188190_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18185736 - 18188190
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TAACGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TCTTCTTTAACG
Flanking Amino Acid:
TVQLLEDLHKDPAIRVLCPW
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.8
0.6
0.9
73.3
41.4
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
81.5
0.85
1.2
78.9
38.1

Associated Gene:

Gene:
FRMPD2
Ensembl Gene ID:
ENSAPLG00000001314
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001453
18141492 - 18188319
46828