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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_182062_182478_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182062 - 182478
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
GTTACTTGCATG
Flanking Amino Acid:
SVKTLLHWGQTAKTGDFKQF
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
45.5
-0.5
1.9
53.53
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015088
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015733
177851 - 183156
5306