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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18229581_18232192_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18229581 - 18232192
Intron Length:
2612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
PIGSGAQGIVCAAYDAILER
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.5
0.84
0.8
81.9
33.4
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018731
18229414 - 18252195
22782
ENSAPLT00000017167
18229414 - 18252195
22782