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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18232323_18233542_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18232323 - 18233542
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTATACTTCATC
Flanking Amino Acid:
VLMKCVNHKNIIGLLNVFTP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
82.1
0.72
0.7
75.9
26.3
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
58
0.23
1.9
72.21
38.9

Associated Gene:

Gene:
MAPK8
Ensembl Gene ID:
ENSAPLG00000016448
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017167
18229414 - 18252195
22782
ENSAPLT00000018731
18229414 - 18252195
22782